The foundation said it was inviting applications from charities with "creative approaches" to combating a significant rise in infections such as chlamydia, gonorrhoea and syphilis.
Brook will help the foundation select the winning bids and will support and monitor the organisations that receive funding.
Branches of Brook will be able to bid for funding - in such instances, Brook will declare an interest and will not participate in the assessment of the bid.
Simon Blake, Brook chief executive, said: "There is an urgent need to change the way young people think about sex and to develop new ways of working with them."
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